Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HF650_RS08735 Genome accession   NZ_CP051488
Coordinates   1849855..1850475 (+) Length   206 a.a.
NCBI ID   WP_187802638.1    Uniprot ID   -
Organism   Kosakonia sp. SMBL-WEM22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844855..1855475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF650_RS08715 (HF650_08735) - 1845245..1846990 (-) 1746 WP_187802006.1 Lon protease family protein -
  HF650_RS08720 (HF650_08740) matP 1847173..1847625 (+) 453 WP_187802007.1 macrodomain Ter protein MatP -
  HF650_RS08725 (HF650_08745) ompA 1847712..1848761 (-) 1050 WP_187802008.1 porin OmpA -
  HF650_RS08730 (HF650_08750) sulA 1849129..1849638 (-) 510 WP_187802009.1 SOS-induced cell division inhibitor SulA -
  HF650_RS08735 (HF650_08755) sxy/tfoX 1849855..1850475 (+) 621 WP_187802638.1 TfoX/Sxy family DNA transformation protein Regulator
  HF650_RS08740 (HF650_08760) yccS 1850472..1852598 (-) 2127 WP_187802010.1 YccS family putative transporter -
  HF650_RS08745 (HF650_08765) - 1852614..1853060 (-) 447 WP_187802011.1 YccF domain-containing protein -
  HF650_RS08750 (HF650_08770) helD 1853183..1855237 (+) 2055 WP_187802012.1 DNA helicase IV -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23347.23 Da        Isoelectric Point: 10.2557

>NTDB_id=438975 HF650_RS08735 WP_187802638.1 1849855..1850475(+) (sxy/tfoX) [Kosakonia sp. SMBL-WEM22]
MEDLCYQRIYQSREYLTSLGQISHRAHFGGYSLAVDNIVFAMIAEGKLYLRACDESAQYDVVRRAPLLNLKKRGRQISLN
YYYVSDNVWGDRGLLLKLSTLALDAARRAKAQREKLFRLRDLPNLSSQLECQLQQAGINDAQILRLLGAKVCWLRLRKMN
KQLSVKVLFALEGAIVGIHEAALPASRRQALLAWANDVMKKGANPL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=438975 HF650_RS08735 WP_187802638.1 1849855..1850475(+) (sxy/tfoX) [Kosakonia sp. SMBL-WEM22]
ATGGAAGACTTATGTTATCAACGGATATATCAATCGCGCGAATATCTCACTTCACTCGGACAAATTAGCCATCGCGCCCA
CTTTGGTGGTTATAGCCTTGCAGTGGATAACATCGTTTTTGCGATGATAGCCGAGGGGAAACTGTACTTACGCGCCTGTG
ACGAAAGCGCGCAGTATGATGTAGTCCGGCGTGCACCACTTTTAAATCTTAAAAAGCGGGGGCGGCAGATATCGTTAAAT
TATTACTACGTCAGCGACAATGTATGGGGCGACCGCGGCTTGCTGCTGAAGCTTTCAACACTGGCGCTTGATGCAGCAAG
GCGGGCGAAAGCGCAGCGCGAAAAACTTTTTCGTCTGCGCGATCTACCCAATCTTTCCAGTCAACTTGAGTGTCAATTGC
AGCAGGCTGGCATCAACGATGCACAAATCCTGCGGCTACTTGGTGCAAAAGTTTGCTGGCTCCGGCTTCGGAAAATGAAC
AAGCAGCTCAGTGTAAAAGTTTTATTTGCACTGGAAGGGGCCATCGTCGGCATTCACGAAGCAGCGCTACCGGCAAGTCG
TCGCCAGGCGCTGCTTGCGTGGGCCAATGATGTGATGAAAAAAGGAGCAAACCCTCTCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.195

99.515

0.519