Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HGP31_RS29315 Genome accession   NZ_CP051487
Coordinates   6467451..6467855 (-) Length   134 a.a.
NCBI ID   WP_020797386.1    Uniprot ID   S2FJG7
Organism   Pseudomonas umsongensis strain CY-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6462451..6472855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGP31_RS29300 (HGP31_29300) - 6464268..6466328 (-) 2061 WP_020797388.1 methyl-accepting chemotaxis protein -
  HGP31_RS29305 (HGP31_29305) - 6466484..6467017 (-) 534 WP_020797387.1 chemotaxis protein CheW -
  HGP31_RS29310 (HGP31_29310) pilH 6467028..6467393 (-) 366 WP_007897961.1 twitching motility response regulator PilH -
  HGP31_RS29315 (HGP31_29315) pilG 6467451..6467855 (-) 405 WP_020797386.1 twitching motility response regulator PilG Regulator
  HGP31_RS29320 (HGP31_29320) gshB 6468199..6469152 (+) 954 WP_020797384.1 glutathione synthase -
  HGP31_RS29325 (HGP31_29325) - 6469217..6470116 (+) 900 WP_020797383.1 energy transducer TonB -
  HGP31_RS29330 (HGP31_29330) - 6470308..6470880 (+) 573 WP_008063482.1 YqgE/AlgH family protein -
  HGP31_RS29335 (HGP31_29335) ruvX 6470880..6471317 (+) 438 WP_020797382.1 Holliday junction resolvase RuvX -
  HGP31_RS29340 (HGP31_29340) pyrR 6471404..6471907 (+) 504 WP_020797381.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14631.14 Da        Isoelectric Point: 7.2150

>NTDB_id=438968 HGP31_RS29315 WP_020797386.1 6467451..6467855(-) (pilG) [Pseudomonas umsongensis strain CY-1]
MEQQPSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIVDHHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
CTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=438968 HGP31_RS29315 WP_020797386.1 6467451..6467855(-) (pilG) [Pseudomonas umsongensis strain CY-1]
ATGGAACAGCAACCCAGCGCCTTGAAGGTCATGGTGATCGACGATTCGAAGACGATTCGCCGCACCGCCGAAACACTGCT
CAAGAATGTGGGTTGTGAGGTCATCACGGCCATCGACGGGTTCGATGCGTTGGCCAAGATCGTCGATCACCACCCCGGCA
TCATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGTTAATCAAGAACAACAGTGCATTCAAG
TGCACGCCAGTGATTATGCTGTCGTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGGCGCATTGTCGGCTCCGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCCAGGCCCATGTTCCGGGCTTTGCCGCTGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2FJG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

93.284

0.694