Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   HGO96_RS06875 Genome accession   NZ_CP051484
Coordinates   1387572..1388288 (+) Length   238 a.a.
NCBI ID   WP_054189591.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA71     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1382572..1393288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS06845 (HGO96_10115) - 1382832..1383458 (+) 627 WP_054189595.1 nitroreductase family protein -
  HGO96_RS06850 (HGO96_10120) - 1383779..1384564 (+) 786 WP_054189594.1 carbon-nitrogen family hydrolase -
  HGO96_RS06855 (HGO96_13710) hld 1385160..1385240 (-) 81 WP_000046022.1 delta-hemolysin -
  HGO96_RS06860 (HGO96_10130) - 1385530..1386099 (+) 570 WP_054189593.1 accessory gene regulator AgrB -
  HGO96_RS06865 (HGO96_10135) - 1386096..1386236 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  HGO96_RS06870 (HGO96_10140) - 1386261..1387553 (+) 1293 WP_054189592.1 GHKL domain-containing protein -
  HGO96_RS06875 (HGO96_10145) agrA 1387572..1388288 (+) 717 WP_054189591.1 LytTR family DNA-binding domain-containing protein Regulator
  HGO96_RS06880 (HGO96_10150) - 1388360..1388468 (+) 109 Protein_1331 hypothetical protein -
  HGO96_RS06885 (HGO96_10155) - 1388665..1389624 (-) 960 WP_054189590.1 carbohydrate kinase -
  HGO96_RS06890 (HGO96_10160) - 1389621..1391105 (-) 1485 WP_054189589.1 sucrose-6-phosphate hydrolase -
  HGO96_RS06895 (HGO96_10165) - 1391254..1392204 (-) 951 WP_054189588.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27904.92 Da        Isoelectric Point: 6.3001

>NTDB_id=438921 HGO96_RS06875 WP_054189591.1 1387572..1388288(+) (agrA) [Staphylococcus aureus strain NGA71]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDNRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=438921 HGO96_RS06875 WP_054189591.1 1387572..1388288(+) (agrA) [Staphylococcus aureus strain NGA71]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACCGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCCGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATAATCGCTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996