Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   IPV43_RS12895 Genome accession   NZ_CP063391
Coordinates   2721732..2722226 (-) Length   164 a.a.
NCBI ID   WP_003116804.1    Uniprot ID   A0ABN4SEL1
Organism   Pseudomonas aeruginosa strain ST167_d68blood2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2716732..2727226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV43_RS12870 (IPV43_12875) - 2716872..2718389 (-) 1518 WP_016445101.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  IPV43_RS12875 (IPV43_12880) - 2718403..2718774 (-) 372 WP_013391810.1 hypothetical protein -
  IPV43_RS12880 (IPV43_12885) - 2718771..2720165 (-) 1395 WP_013391809.1 integrating conjugative element protein -
  IPV43_RS12885 (IPV43_12890) - 2720175..2721125 (-) 951 WP_003116802.1 TIGR03756 family integrating conjugative element protein -
  IPV43_RS12890 (IPV43_12895) - 2721122..2721568 (-) 447 WP_003116803.1 TIGR03757 family integrating conjugative element protein -
  IPV43_RS12895 (IPV43_12900) radC 2721732..2722226 (-) 495 WP_003116804.1 JAB domain-containing protein Machinery gene
  IPV43_RS12900 (IPV43_12905) - 2722402..2723166 (-) 765 WP_003116805.1 thioredoxin domain-containing protein -
  IPV43_RS12905 (IPV43_12910) - 2723180..2726074 (-) 2895 WP_013391807.1 conjugative transfer ATPase -
  IPV43_RS12910 (IPV43_12915) - 2726074..2726523 (-) 450 WP_003116807.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18113.90 Da        Isoelectric Point: 5.9747

>NTDB_id=438825 IPV43_RS12895 WP_003116804.1 2721732..2722226(-) (radC) [Pseudomonas aeruginosa strain ST167_d68blood2]
MSFVVNDSYLESLSAIATQHEDWIIQQAIVLLERRIFKAGPCLSRPAAVRDYLRLKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVAQRVLELNAAAVVFSHQHPSGISEPSSADRMLTQQLQVALALIDVRVLDHIIVGQGAPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=438825 IPV43_RS12895 WP_003116804.1 2721732..2722226(-) (radC) [Pseudomonas aeruginosa strain ST167_d68blood2]
ATGTCTTTCGTCGTCAATGACTCCTACCTGGAGTCGCTTTCCGCCATCGCTACCCAACACGAGGACTGGATCATCCAGCA
AGCCATCGTGCTGCTGGAGAGACGGATCTTCAAAGCTGGACCGTGCCTCAGCCGACCGGCCGCTGTGCGGGACTACCTGC
GTCTGAAACTGGTCGCTGAGCCCAATGAGATATTCGCCGCTGTGTTCCTGGACAGCATGCACCAGGTGCTGGCCTACGAG
CCGTTGTTCAGGGGCACGATCAACTCGACATCGGTCTATCCGCGTGTCGTCGCGCAGCGTGTGCTGGAGTTGAATGCCGC
CGCGGTGGTCTTCAGCCACCAGCACCCCTCGGGCATCTCCGAACCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGTCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.781

89.024

0.372