Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IPV43_RS09430 Genome accession   NZ_CP063391
Coordinates   2024952..2025281 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain ST167_d68blood2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019952..2030281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV43_RS09415 (IPV43_09430) - 2020566..2021528 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  IPV43_RS09420 (IPV43_09435) - 2021528..2022565 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  IPV43_RS09425 (IPV43_09440) - 2022763..2024761 (+) 1999 Protein_1873 nucleoside-diphosphate sugar epimerase/dehydratase -
  IPV43_RS09430 (IPV43_09445) comEA/comE1 2024952..2025281 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  IPV43_RS09440 (IPV43_09455) - 2025498..2026694 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  IPV43_RS09445 (IPV43_09460) uvrB 2026882..2028894 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=438808 IPV43_RS09430 WP_003104586.1 2024952..2025281(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST167_d68blood2]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=438808 IPV43_RS09430 WP_003104586.1 2024952..2025281(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST167_d68blood2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385