Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HC658_RS14025 Genome accession   NZ_CP051466
Coordinates   2705248..2705994 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2700248..2710994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS14000 (HC658_27530) mreC 2700654..2701526 (-) 873 WP_032677108.1 rod shape-determining protein MreC -
  HC658_RS14005 (HC658_27540) mreB 2701557..2702570 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  HC658_RS14010 (HC658_27550) radC 2702662..2703357 (-) 696 WP_015251546.1 DNA repair protein RadC -
  HC658_RS14015 (HC658_27560) maf 2703394..2703963 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  HC658_RS14020 (HC658_27570) spoIIB 2704116..2705114 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  HC658_RS14025 (HC658_27580) comC 2705248..2705994 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  HC658_RS14030 (HC658_27590) folC 2706137..2707429 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HC658_RS14035 (HC658_27600) valS 2707489..2710131 (-) 2643 WP_089172615.1 valine--tRNA ligase -
  HC658_RS14040 (HC658_27610) - 2710579..2710770 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=438670 HC658_RS14025 WP_072592551.1 2705248..2705994(-) (comC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=438670 HC658_RS14025 WP_072592551.1 2705248..2705994(-) (comC) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996