Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HC658_RS10985 Genome accession   NZ_CP051466
Coordinates   2181567..2182187 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176567..2187187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS10945 (HC658_21580) ptsA 2177698..2178204 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  HC658_RS10950 (HC658_21590) ypqA 2178342..2178761 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  HC658_RS10955 (HC658_21600) sppG 2178782..2179159 (-) 378 WP_004398696.1 YppG family protein -
  HC658_RS10960 (HC658_21610) yppF 2179347..2179535 (+) 189 WP_003230690.1 YppF family protein -
  HC658_RS10965 (HC658_21620) yppE 2179574..2179945 (-) 372 WP_003246080.1 YppE family protein -
  HC658_RS10970 (HC658_21630) yppD 2179991..2180236 (-) 246 WP_004398488.1 YppD family protein -
  HC658_RS10975 (HC658_21640) sspM 2180435..2180539 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  HC658_RS10980 (HC658_21650) yppC 2180564..2181526 (-) 963 WP_089172579.1 DUF2515 domain-containing protein -
  HC658_RS10985 (HC658_21660) recU 2181567..2182187 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  HC658_RS10990 (HC658_21670) ponA 2182209..2184953 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  HC658_RS10995 (HC658_21680) ypoC 2185029..2185523 (-) 495 WP_009967579.1 YpoC family protein -
  HC658_RS11000 (HC658_21690) nth 2185520..2186179 (-) 660 WP_009967580.1 endonuclease III -
  HC658_RS11005 (HC658_21700) dnaD 2186198..2186896 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=438650 HC658_RS10985 WP_004399067.1 2181567..2182187(+) (recU) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=438650 HC658_RS10985 WP_004399067.1 2181567..2182187(+) (recU) [Bacillus subtilis subsp. subtilis strain UCMB5021]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1