Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HC658_RS07800 Genome accession   NZ_CP051466
Coordinates   1494314..1494592 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489314..1499592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS07780 (HC658_15330) panEB 1490501..1491412 (+) 912 WP_032721491.1 ketopantoate reductase family protein -
  HC658_RS07785 (HC658_15340) ampS 1491446..1492678 (-) 1233 WP_003232341.1 aminopeptidase -
  HC658_RS07790 ykpC 1492788..1492922 (-) 135 WP_003238865.1 protein YkpC -
  HC658_RS07795 (HC658_15350) mreBH 1493023..1494030 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  HC658_RS07800 (HC658_15360) abrB 1494314..1494592 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  HC658_RS07805 (HC658_15370) kinC 1494782..1496068 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  HC658_RS07810 (HC658_15380) ykqA 1496084..1496911 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  HC658_RS07815 (HC658_15390) ktrC 1496974..1497639 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  HC658_RS07820 (HC658_15400) ade 1497795..1499528 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=438645 HC658_RS07800 WP_003244728.1 1494314..1494592(+) (abrB) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=438645 HC658_RS07800 WP_003244728.1 1494314..1494592(+) (abrB) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576