Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HC658_RS05625 Genome accession   NZ_CP051466
Coordinates   1095191..1095769 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090191..1100769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS05605 (HC658_11060) hemAT 1090702..1092000 (-) 1299 WP_032721925.1 heme-based aerotactic transducer HemAT -
  HC658_RS05610 (HC658_11070) comW 1092139..1093668 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  HC658_RS05615 (HC658_11080) yhxC 1093780..1094637 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  HC658_RS05620 (HC658_11090) yhzC 1094665..1094898 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  HC658_RS05625 (HC658_11100) comK 1095191..1095769 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  HC658_RS05630 (HC658_11110) yhxD 1095816..1096715 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  HC658_RS05635 (HC658_11120) yhjA 1096932..1097201 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  HC658_RS05640 (HC658_11130) yhjB 1097244..1098713 (-) 1470 WP_032721274.1 sodium:solute symporter -
  HC658_RS05645 (HC658_11140) yhjC 1098710..1098910 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  HC658_RS05650 (HC658_11150) - 1099118..1099480 (-) 363 WP_024571727.1 hypothetical protein -
  HC658_RS05655 (HC658_11160) yhjE 1099632..1100255 (+) 624 WP_010886465.1 VTT domain-containing protein -
  HC658_RS05660 (HC658_11170) lepB 1100257..1100763 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=438631 HC658_RS05625 WP_029317573.1 1095191..1095769(+) (comK) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=438631 HC658_RS05625 WP_029317573.1 1095191..1095769(+) (comK) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995