Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   HC658_RS04560 Genome accession   NZ_CP051466
Coordinates   903730..904524 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 898730..909524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS04530 (HC658_08920) sxzA 899569..900600 (+) 1032 WP_003233568.1 iron ABC transporter permease -
  HC658_RS04535 (HC658_08930) yfhB 900715..901596 (+) 882 WP_089172495.1 PhzF family phenazine biosynthesis isomerase -
  HC658_RS04540 (HC658_08940) yfhC 901684..902268 (+) 585 WP_003243940.1 nitroreductase -
  HC658_RS04545 (HC658_08950) yfhD 902307..902498 (-) 192 WP_003233561.1 YfhD family protein -
  HC658_RS04550 (HC658_08960) yfhE 902565..902675 (-) 111 WP_003223230.1 YfhE family protein -
  HC658_RS04555 (HC658_08970) yfhF 902730..903641 (-) 912 WP_029726845.1 TIGR01777 family oxidoreductase -
  HC658_RS04560 (HC658_08980) recX 903730..904524 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  HC658_RS04565 (HC658_08990) yfhH 904526..904846 (+) 321 WP_029726843.1 YfhH family protein -
  HC658_RS04570 (HC658_09000) yfhI 904983..906176 (+) 1194 WP_072692836.1 MFS transporter -
  HC658_RS04575 (HC658_09010) sspK 906208..906360 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  HC658_RS04580 (HC658_09020) yfhJ 906485..906754 (+) 270 WP_003243789.1 YfhJ family protein -
  HC658_RS04585 (HC658_09030) yfhK 906899..907417 (+) 519 WP_029726841.1 SH3 domain-containing protein -
  HC658_RS04590 (HC658_09040) spdL 907502..907819 (+) 318 WP_032679045.1 SdpC immunity protein SpdL -
  HC658_RS04595 (HC658_09050) ephM 907821..908681 (+) 861 WP_029726839.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=438626 HC658_RS04560 WP_029726844.1 903730..904524(+) (recX) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=438626 HC658_RS04560 WP_029726844.1 903730..904524(+) (recX) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996