Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   HC658_RS01990 Genome accession   NZ_CP051466
Coordinates   371449..371847 (-) Length   132 a.a.
NCBI ID   WP_032722902.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366449..376847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS01960 (HC658_03870) yckA 367149..367829 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  HC658_RS01965 (HC658_03880) yckB 367839..368702 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  HC658_RS01970 - 368864..369056 (+) 193 Protein_343 hypothetical protein -
  HC658_RS01975 (HC658_03890) - 369092..369412 (+) 321 Protein_344 RDD family protein -
  HC658_RS01980 (HC658_03900) yckD 369494..369826 (+) 333 WP_015252849.1 YckD family protein -
  HC658_RS01985 (HC658_03910) bglC 369979..371412 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  HC658_RS01990 (HC658_03920) nin/comJ 371449..371847 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  HC658_RS01995 (HC658_03930) nucA/comI 371874..372323 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  HC658_RS02000 (HC658_03940) tlpC 372491..374212 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  HC658_RS02005 (HC658_03950) hxlB 374323..374880 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  HC658_RS02010 (HC658_03960) hxlA 374886..375518 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  HC658_RS02015 (HC658_03970) hxlR 375751..376113 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14961.94 Da        Isoelectric Point: 5.1546

>NTDB_id=438615 HC658_RS01990 WP_032722902.1 371449..371847(-) (nin/comJ) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAANGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=438615 HC658_RS01990 WP_032722902.1 371449..371847(-) (nin/comJ) [Bacillus subtilis subsp. subtilis strain UCMB5021]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAAACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985