Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HC659_RS13985 Genome accession   NZ_CP051465
Coordinates   2705036..2705782 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2700036..2710782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS13960 (HC659_27510) mreC 2700442..2701314 (-) 873 WP_032677108.1 rod shape-determining protein MreC -
  HC659_RS13965 (HC659_27520) mreB 2701345..2702358 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  HC659_RS13970 (HC659_27530) radC 2702450..2703145 (-) 696 WP_015251546.1 DNA repair protein RadC -
  HC659_RS13975 (HC659_27540) maf 2703182..2703751 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  HC659_RS13980 (HC659_27550) spoIIB 2703904..2704902 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  HC659_RS13985 (HC659_27560) comC 2705036..2705782 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  HC659_RS13990 (HC659_27570) folC 2705925..2707217 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HC659_RS13995 (HC659_27580) valS 2707277..2709919 (-) 2643 WP_089172615.1 valine--tRNA ligase -
  HC659_RS14000 (HC659_27590) - 2710367..2710558 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=438587 HC659_RS13985 WP_072592551.1 2705036..2705782(-) (comC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=438587 HC659_RS13985 WP_072592551.1 2705036..2705782(-) (comC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996