Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IPV45_RS01925 Genome accession   NZ_CP063389
Coordinates   417410..418759 (+) Length   449 a.a.
NCBI ID   WP_031686323.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST1076_d97burn2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412410..423759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV45_RS01905 (IPV45_01900) - 413247..413813 (-) 567 WP_003084491.1 hypothetical protein -
  IPV45_RS01910 (IPV45_01905) rsmD 413816..414412 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IPV45_RS01915 (IPV45_01910) - 414412..415899 (-) 1488 WP_019485883.1 pitrilysin family protein -
  IPV45_RS01920 (IPV45_01915) - 415892..417289 (-) 1398 WP_003084498.1 pitrilysin family protein -
  IPV45_RS01925 (IPV45_01920) pilA 417410..418759 (+) 1350 WP_031686323.1 signal recognition particle-docking protein FtsY Machinery gene
  IPV45_RS01930 (IPV45_01925) ftsE 418756..419427 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  IPV45_RS01935 (IPV45_01930) ftsX 419427..420434 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  IPV45_RS01940 (IPV45_01935) rpoH 420548..421402 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  IPV45_RS01945 (IPV45_01940) - 421467..422072 (+) 606 WP_003084511.1 hypothetical protein -
  IPV45_RS01950 (IPV45_01945) mtgA 422077..422808 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  IPV45_RS01955 (IPV45_01950) - 422845..423222 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  IPV45_RS01960 (IPV45_01955) thiS 423325..423525 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47703.09 Da        Isoelectric Point: 4.6083

>NTDB_id=438583 IPV45_RS01925 WP_031686323.1 417410..418759(+) (pilA) [Pseudomonas aeruginosa strain ST1076_d97burn2]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAESAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=438583 IPV45_RS01925 WP_031686323.1 417410..418759(+) (pilA) [Pseudomonas aeruginosa strain ST1076_d97burn2]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGTCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.796

95.991

0.459