Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HC659_RS12465 Genome accession   NZ_CP051465
Coordinates   2449379..2450146 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2444379..2455146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS12445 (HC659_24630) ppsR 2444553..2445365 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  HC659_RS12450 (HC659_24640) ccpN 2445391..2446029 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  HC659_RS12455 (HC659_24650) glyS 2446162..2448201 (-) 2040 WP_069964217.1 glycine--tRNA ligase subunit beta -
  HC659_RS12460 (HC659_24660) glyQ 2448194..2449081 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  HC659_RS12465 (HC659_24670) recO 2449379..2450146 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  HC659_RS12470 (HC659_24680) yqzL 2450183..2450326 (-) 144 WP_003230053.1 YqzL family protein -
  HC659_RS12475 (HC659_24690) era 2450474..2451379 (-) 906 WP_003230051.1 GTPase Era -
  HC659_RS12480 (HC659_24700) - 2451360..2451770 (-) 411 WP_003230049.1 cytidine deaminase -
  HC659_RS12485 (HC659_24710) unpK 2451889..2452260 (-) 372 WP_046160604.1 diacylglycerol kinase family protein -
  HC659_RS12490 (HC659_24720) ybeY 2452241..2452714 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  HC659_RS12495 (HC659_24730) pgpH 2452715..2454850 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=438579 HC659_RS12465 WP_003230055.1 2449379..2450146(-) (recO) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=438579 HC659_RS12465 WP_003230055.1 2449379..2450146(-) (recO) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1