Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HC659_RS10945 Genome accession   NZ_CP051465
Coordinates   2181317..2181937 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176317..2186937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS10905 (HC659_21550) ptsA 2177448..2177954 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  HC659_RS10910 (HC659_21560) ypqA 2178092..2178511 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  HC659_RS10915 (HC659_21570) sppG 2178532..2178909 (-) 378 WP_004398696.1 YppG family protein -
  HC659_RS10920 (HC659_21580) yppF 2179097..2179285 (+) 189 WP_003230690.1 YppF family protein -
  HC659_RS10925 (HC659_21590) yppE 2179324..2179695 (-) 372 WP_003246080.1 YppE family protein -
  HC659_RS10930 (HC659_21600) yppD 2179741..2179986 (-) 246 WP_004398488.1 YppD family protein -
  HC659_RS10935 (HC659_21610) sspM 2180185..2180289 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  HC659_RS10940 (HC659_21620) yppC 2180314..2181276 (-) 963 WP_089172579.1 DUF2515 domain-containing protein -
  HC659_RS10945 (HC659_21630) recU 2181317..2181937 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  HC659_RS10950 (HC659_21640) ponA 2181959..2184703 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  HC659_RS10955 (HC659_21650) ypoC 2184779..2185273 (-) 495 WP_009967579.1 YpoC family protein -
  HC659_RS10960 (HC659_21660) nth 2185270..2185929 (-) 660 WP_009967580.1 endonuclease III -
  HC659_RS10965 (HC659_21670) dnaD 2185948..2186646 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=438567 HC659_RS10945 WP_004399067.1 2181317..2181937(+) (recU) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=438567 HC659_RS10945 WP_004399067.1 2181317..2181937(+) (recU) [Bacillus subtilis subsp. subtilis strain UCMB5121]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1