Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HC659_RS05590 Genome accession   NZ_CP051465
Coordinates   1094942..1095520 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089942..1100520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS05570 (HC659_11030) hemAT 1090453..1091751 (-) 1299 WP_032721925.1 heme-based aerotactic transducer HemAT -
  HC659_RS05575 (HC659_11040) comW 1091890..1093419 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  HC659_RS05580 (HC659_11050) yhxC 1093531..1094388 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  HC659_RS05585 (HC659_11060) yhzC 1094416..1094649 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  HC659_RS05590 (HC659_11070) comK 1094942..1095520 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  HC659_RS05595 (HC659_11080) yhxD 1095567..1096466 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  HC659_RS05600 (HC659_11090) yhjA 1096683..1096952 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  HC659_RS05605 (HC659_11100) yhjB 1096995..1098464 (-) 1470 WP_032721274.1 sodium:solute symporter -
  HC659_RS05610 (HC659_11110) yhjC 1098461..1098661 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  HC659_RS05615 (HC659_11120) - 1098869..1099231 (-) 363 WP_024571727.1 hypothetical protein -
  HC659_RS05620 (HC659_11130) yhjE 1099383..1100006 (+) 624 WP_010886465.1 VTT domain-containing protein -
  HC659_RS05625 (HC659_11140) lepB 1100008..1100514 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=438548 HC659_RS05590 WP_029317573.1 1094942..1095520(+) (comK) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=438548 HC659_RS05590 WP_029317573.1 1094942..1095520(+) (comK) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995