Detailed information NTG0438521

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HC660_RS19020
• Genome accession: NZ_CP051464
• Coordinates: 3660646..3661791 (+)
• Length: 381 a.a.
• NCBI ID: WP_168749007.1
• Uniprot ID: -
• Organism: Bacillus mojavensis strain UCMB5075
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3655646..3666791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC660_RS19000 (HC660_36500)	-	3655689..3656966 (+)	1278	WP_168749003.1	pitrilysin family protein	-
HC660_RS19005 (HC660_36510)	-	3656963..3657664 (+)	702	WP_168749004.1	bacteriocin biosynthesis protein AlbG	-
HC660_RS19010 (HC660_36520)	-	3657671..3659026 (-)	1356	WP_168749005.1	YncE family protein	-
HC660_RS19015 (HC660_36530)	-	3659067..3660419 (-)	1353	WP_168749006.1	YncE family protein	-
HC660_RS19020 (HC660_36540)	rapF	3660646..3661791 (+)	1146	WP_168749007.1	tetratricopeptide repeat protein	Regulator
HC660_RS19025	-	3661775..3661894 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HC660_RS19030 (HC660_36550)	speB	3662025..3662897 (-)	873	WP_010332291.1	agmatinase	-
HC660_RS19035 (HC660_36560)	speE	3662959..3663789 (-)	831	WP_168749008.1	spermidine synthase	-
HC660_RS19040 (HC660_36570)	-	3663991..3666066 (+)	2076	WP_168749009.1	transglycosylase domain-containing protein	-
HC660_RS19045 (HC660_36580)	-	3666099..3666521 (-)	423	WP_168749010.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45697.34 Da
• Isoelectric Point: 4.9324

>NTDB_id=438521 HC660_RS19020 WP_168749007.1 3660646..3661791(+) (rapF) [Bacillus mojavensis strain UCMB5075]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLNFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAEDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQKENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=438521 HC660_RS19020 WP_168749007.1 3660646..3661791(+) (rapF) [Bacillus mojavensis strain UCMB5075]
GTGACAAGTGTCATATCTTCTTCTTCCGTGGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACC
GGATGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAAATTGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGACCGACGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGAATTTTG
TTAAAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTGTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAGTCCCT
GTTTGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAAG
CAGAACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGCCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTTTTTGAAGAATCGAAAATGCTACCTTCACTGCCACAAGCCTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAG
CTGCAGAAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGAAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (193-213)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57