Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HC660_RS13645 Genome accession   NZ_CP051464
Coordinates   2597814..2598560 (-) Length   248 a.a.
NCBI ID   WP_168748370.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2592814..2603560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS13620 (HC660_26030) mreC 2593223..2594095 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  HC660_RS13625 (HC660_26040) mreB 2594126..2595139 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  HC660_RS13630 (HC660_26050) radC 2595231..2595926 (-) 696 WP_168748368.1 DNA repair protein RadC -
  HC660_RS13635 (HC660_26060) - 2595963..2596532 (-) 570 WP_010335166.1 Maf family nucleotide pyrophosphatase -
  HC660_RS13640 (HC660_26070) - 2596683..2597681 (-) 999 WP_168748369.1 SPOR domain-containing protein -
  HC660_RS13645 (HC660_26080) comC 2597814..2598560 (-) 747 WP_168748370.1 A24 family peptidase Machinery gene
  HC660_RS13650 (HC660_26090) - 2598701..2599993 (-) 1293 WP_168748371.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HC660_RS13655 (HC660_26100) valS 2600053..2602695 (-) 2643 WP_168748372.1 valine--tRNA ligase -
  HC660_RS13660 (HC660_26110) - 2603143..2603334 (+) 192 WP_010335171.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26587.25 Da        Isoelectric Point: 9.7432

>NTDB_id=438503 HC660_RS13645 WP_168748370.1 2597814..2598560(-) (comC) [Bacillus mojavensis strain UCMB5075]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGRCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLYSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLLAVIGLVLGVKMLAAAFFFSVLIGALYGTAAVLFGRLGRKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=438503 HC660_RS13645 WP_168748370.1 2597814..2598560(-) (comC) [Bacillus mojavensis strain UCMB5075]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACCCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAGATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTTATTCATGGTATGAAGGCTTCATAGGTGCGGCTGCCGGTTTTCTTTTGCTGGCTTTTATT
GCCGTCATCACTCACGGAGGAATAGGGGGAGGGGATATTAAATTACTTGCCGTCATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCGTTTTTTTTCTCCGTACTTATAGGAGCATTGTACGGAACTGCCGCTGTACTGTTCGGAAGGCTGGGCA
GAAAACAGCCGATTCCCTTTGCACCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.645

100

0.806