Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HC660_RS12830 Genome accession   NZ_CP051464
Coordinates   2449104..2449529 (-) Length   141 a.a.
NCBI ID   WP_168748287.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2444104..2454529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS21235 - 2444364..2444498 (-) 135 WP_010335019.1 hypothetical protein -
  HC660_RS12805 (HC660_24500) - 2444576..2445304 (-) 729 WP_010335020.1 SGNH/GDSL hydrolase family protein -
  HC660_RS12810 (HC660_24510) - 2445551..2446303 (-) 753 WP_168748283.1 N-acetylmuramoyl-L-alanine amidase -
  HC660_RS12815 (HC660_24520) - 2446498..2447124 (+) 627 WP_168748284.1 TVP38/TMEM64 family protein -
  HC660_RS12820 (HC660_24530) gnd 2447146..2448039 (-) 894 WP_168748285.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  HC660_RS12825 (HC660_24540) - 2448342..2449070 (+) 729 WP_168748286.1 DUF308 domain-containing protein -
  HC660_RS12830 (HC660_24550) nucA/comI 2449104..2449529 (-) 426 WP_168748287.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HC660_RS12835 (HC660_24560) sigK 2449706..2450434 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  HC660_RS12840 - 2450566..2450831 (-) 266 Protein_2495 recombinase family protein -
  HC660_RS12845 (HC660_24580) - 2451481..2452242 (+) 762 WP_168748288.1 MBL fold metallo-hydrolase -
  HC660_RS12850 (HC660_24590) - 2452289..2452702 (+) 414 WP_211090763.1 ester cyclase -
  HC660_RS12855 (HC660_24600) - 2452732..2453298 (+) 567 WP_168748289.1 OsmC family protein -
  HC660_RS12860 (HC660_24610) - 2453569..2454345 (-) 777 WP_168748290.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15526.71 Da        Isoelectric Point: 5.2215

>NTDB_id=438499 HC660_RS12830 WP_168748287.1 2449104..2449529(-) (nucA/comI) [Bacillus mojavensis strain UCMB5075]
MKRWMAMLLLAATVFLCLLGKDMTAPQQVKGAALYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGFDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=438499 HC660_RS12830 WP_168748287.1 2449104..2449529(-) (nucA/comI) [Bacillus mojavensis strain UCMB5075]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAACAGTTTTTCTTTGTTTATTGGGAAAGGATATGACAGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAGTTTTATATTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGTTTTGATCGAGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGCTATGTAACGCCCTCGGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCGGTTATCCAGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.484

87.943

0.532