Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HC660_RS12580 Genome accession   NZ_CP051464
Coordinates   2405551..2406318 (-) Length   255 a.a.
NCBI ID   WP_168748263.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2400551..2411318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS12560 (HC660_24040) - 2400724..2401536 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  HC660_RS12565 (HC660_24050) ccpN 2401562..2402200 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  HC660_RS12570 (HC660_24060) glyS 2402335..2404374 (-) 2040 WP_168748262.1 glycine--tRNA ligase subunit beta -
  HC660_RS12575 (HC660_24070) glyQ 2404367..2405254 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  HC660_RS12580 (HC660_24080) recO 2405551..2406318 (-) 768 WP_168748263.1 DNA repair protein RecO Machinery gene
  HC660_RS12585 - 2406355..2406498 (-) 144 WP_024122087.1 YqzL family protein -
  HC660_RS12590 (HC660_24090) era 2406642..2407547 (-) 906 WP_010334979.1 GTPase Era -
  HC660_RS12595 (HC660_24100) - 2407528..2407938 (-) 411 WP_010334980.1 cytidine deaminase -
  HC660_RS12600 (HC660_24120) - 2408059..2408430 (-) 372 WP_026014745.1 diacylglycerol kinase family protein -
  HC660_RS12605 (HC660_24130) ybeY 2408411..2408884 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  HC660_RS12610 (HC660_24140) pgpH 2408885..2411020 (-) 2136 WP_168748264.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29346.03 Da        Isoelectric Point: 8.0180

>NTDB_id=438495 HC660_RS12580 WP_168748263.1 2405551..2406318(-) (recO) [Bacillus mojavensis strain UCMB5075]
MLTKCEGIVLRTNDYGETNKIVTLLTREYGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKDEVKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=438495 HC660_RS12580 WP_168748263.1 2405551..2406318(-) (recO) [Bacillus mojavensis strain UCMB5075]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATAGTTACTTTACTGACAAG
AGAGTACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATTCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCCGAGCTTGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGATGAAGGAACTGACCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTATTGAGATTGTTTTATTACTTTGATCTTTCAAGGATTGGCAATGTGTCCTTAAAGCAGGAAA
CGAAAGATGAAGTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGAGTTTATCTGAAATCGAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

93.725

100

0.937