Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   HC660_RS06335 Genome accession   NZ_CP051464
Coordinates   1233657..1234808 (+) Length   383 a.a.
NCBI ID   WP_168747422.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1228657..1239808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS06305 (HC660_12050) - 1229329..1230546 (+) 1218 WP_168749415.1 MFS transporter -
  HC660_RS06310 (HC660_12060) - 1230713..1231291 (+) 579 WP_010333747.1 GNAT family N-acetyltransferase -
  HC660_RS06315 (HC660_12070) spx 1231470..1231865 (+) 396 WP_010333748.1 transcriptional regulator Spx -
  HC660_RS06320 (HC660_12080) - 1231908..1232564 (-) 657 WP_168747421.1 TerC family protein -
  HC660_RS06325 - 1232751..1232876 (+) 126 WP_120698858.1 hypothetical protein -
  HC660_RS06330 (HC660_12090) mecA 1232843..1233499 (+) 657 WP_010333750.1 adaptor protein MecA Regulator
  HC660_RS06335 (HC660_12100) coiA 1233657..1234808 (+) 1152 WP_168747422.1 competence protein CoiA family protein Machinery gene
  HC660_RS06340 (HC660_12110) pepF 1235038..1236867 (+) 1830 WP_010333752.1 oligoendopeptidase F -
  HC660_RS06345 (HC660_12120) - 1236905..1237072 (-) 168 WP_010333753.1 hypothetical protein -
  HC660_RS06350 (HC660_12130) spxH 1237385..1238284 (-) 900 WP_010333755.1 protease adaptor protein SpxH -
  HC660_RS06355 (HC660_12140) - 1238281..1238679 (-) 399 WP_010333756.1 thiol management oxidoreductase -
  HC660_RS06360 (HC660_12150) - 1238946..1239677 (-) 732 WP_168747423.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44694.75 Da        Isoelectric Point: 9.9560

>NTDB_id=438472 HC660_RS06335 WP_168747422.1 1233657..1234808(+) (coiA) [Bacillus mojavensis strain UCMB5075]
MFSAVTEDGQVFHLIGRQSREKLKQTRFFCPVCAEELDVKLGSQKAPHFAHKQNKSCTIDIEPESAYHLEGKRQLYVWLK
TQKASPLLEPYVREIKQRPDILAKVKGNTLAVEYQCATLPPDVFQKRTAGFKQAGMIPRWILGVSRLKRTSSSFYQLSAF
HWQFINTSQNSDLLCYCPKTHSFLRLSHMIPFYTTHFYCSVQTIPVRQAAAEDLFFTESDSSFKHTDWTGAILRFRRKTH
RFLSKDINRLRLLFYEKRQTPLSFLPTEVFVPVQKGAVFKSPVFVWQGYLYLFITDLGYKHAPIRFSAILQHCKLHIHKK
NILLRGEYSDQGLSEAVKQYIEFLCKKGFLRETQKEVYVLNQPAKRSQSLQDLIEKDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=438472 HC660_RS06335 WP_168747422.1 1233657..1234808(+) (coiA) [Bacillus mojavensis strain UCMB5075]
TTGTTTAGTGCTGTGACAGAAGACGGTCAAGTTTTCCACCTCATAGGCAGGCAGAGCAGAGAAAAATTAAAGCAGACCAG
GTTTTTTTGCCCGGTGTGTGCAGAGGAGCTCGATGTGAAGCTAGGGTCTCAGAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCACGATAGACATAGAACCTGAGAGCGCCTATCACTTAGAAGGAAAACGGCAGCTATATGTATGGCTGAAA
ACGCAAAAGGCTTCACCGCTCTTAGAGCCGTATGTCCGAGAGATTAAACAAAGGCCCGACATCTTGGCGAAAGTTAAGGG
GAATACGCTTGCTGTTGAATACCAATGCGCGACTCTCCCTCCTGATGTCTTTCAAAAAAGAACAGCCGGTTTCAAACAAG
CAGGAATGATACCGCGGTGGATTCTTGGGGTCAGCCGCTTAAAACGGACATCTTCATCCTTTTACCAGCTGTCCGCTTTC
CATTGGCAGTTTATCAATACCAGTCAGAACAGCGATCTGTTATGTTACTGCCCCAAAACACATTCTTTCCTGAGGCTCAG
CCACATGATCCCGTTTTACACAACCCATTTTTACTGCTCCGTCCAAACGATTCCAGTCCGTCAGGCAGCGGCAGAAGATC
TCTTTTTCACTGAATCGGATTCATCGTTTAAGCACACAGATTGGACAGGAGCCATTCTCCGTTTTCGCCGCAAAACTCAT
CGGTTTCTCTCTAAAGATATAAATCGGCTTAGGCTTTTGTTTTATGAAAAACGGCAAACGCCTCTCTCTTTTCTTCCGAC
AGAGGTGTTTGTTCCTGTACAGAAAGGAGCCGTTTTCAAGAGTCCCGTTTTTGTATGGCAGGGTTATCTTTATCTGTTTA
TTACGGATCTTGGGTATAAACATGCGCCCATTCGCTTTTCAGCCATTTTGCAGCACTGCAAACTACACATTCATAAAAAG
AACATTCTACTCAGAGGAGAATACAGCGATCAGGGTCTCAGTGAGGCTGTTAAACAGTACATTGAATTTTTGTGCAAGAA
GGGATTTTTAAGAGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCCGCAAAGCGCAGCCAATCATTACAGGATCTCA
TTGAAAAAGACAGAAGCTGTTTTATCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

75.871

97.389

0.739