Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HC660_RS01965 Genome accession   NZ_CP051464
Coordinates   368751..369188 (-) Length   145 a.a.
NCBI ID   WP_010332985.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363751..374188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS20950 - 364424..364525 (+) 102 Protein_338 formaldehyde dehydrogenase -
  HC660_RS01925 - 364522..364617 (-) 96 Protein_339 RDD family protein -
  HC660_RS01930 - 364623..364739 (+) 117 Protein_340 RDD family protein -
  HC660_RS01935 (HC660_03780) - 364819..365154 (+) 336 WP_168746903.1 YckD family protein -
  HC660_RS01940 (HC660_03790) - 365291..365710 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  HC660_RS01945 - 365701..366039 (+) 339 WP_168746904.1 DUF3147 family protein -
  HC660_RS01950 (HC660_03800) - 366056..366784 (+) 729 WP_168746905.1 AAA family ATPase -
  HC660_RS01955 (HC660_03810) - 366857..368290 (+) 1434 WP_168746906.1 family 1 glycosylhydrolase -
  HC660_RS01960 (HC660_03820) nin/comJ 368326..368724 (-) 399 WP_168746907.1 competence protein ComJ Regulator
  HC660_RS01965 (HC660_03830) nucA/comI 368751..369188 (-) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  HC660_RS01970 (HC660_03840) tlpC 369375..371099 (-) 1725 WP_168749356.1 methyl-accepting chemotaxis protein TlpC -
  HC660_RS01975 (HC660_03850) hxlB 371214..371771 (-) 558 WP_168746908.1 6-phospho-3-hexuloisomerase -
  HC660_RS01980 (HC660_03860) hxlA 371777..372409 (-) 633 WP_168746909.1 3-hexulose-6-phosphate synthase -
  HC660_RS01985 (HC660_03870) hxlR 372639..373001 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15987.71 Da        Isoelectric Point: 4.2036

>NTDB_id=438454 HC660_RS01965 WP_010332985.1 368751..369188(-) (nucA/comI) [Bacillus mojavensis strain UCMB5075]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTSQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
EQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=438454 HC660_RS01965 WP_010332985.1 368751..369188(-) (nucA/comI) [Bacillus mojavensis strain UCMB5075]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTTGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGTCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

90.278

99.31

0.897