Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HC660_RS00245 Genome accession   NZ_CP051464
Coordinates   44549..44839 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus mojavensis strain UCMB5075     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39549..49839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS00205 (HC660_00400) darA 39568..39897 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  HC660_RS00210 (HC660_00410) - 39910..40350 (+) 441 WP_168746746.1 YaaR family protein -
  HC660_RS00215 (HC660_00420) holB 40362..41351 (+) 990 WP_010332685.1 DNA polymerase III subunit delta' -
  HC660_RS00220 (HC660_00430) ricT 41354..42181 (+) 828 WP_010332686.1 competence/sporulation regulator complex protein RicT -
  HC660_RS00225 (HC660_00440) yabA 42196..42555 (+) 360 WP_010332687.1 replication initiation-control protein YabA -
  HC660_RS00230 (HC660_00450) - 42616..43360 (+) 745 Protein_33 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HC660_RS00235 (HC660_00460) - 43347..43646 (+) 300 WP_010332689.1 GIY-YIG nuclease family protein -
  HC660_RS00240 (HC660_00470) rsmI 43621..44499 (+) 879 WP_168746747.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HC660_RS00245 (HC660_00480) abrB 44549..44839 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  HC660_RS00250 (HC660_00490) metG 45336..47330 (+) 1995 WP_168746748.1 methionine--tRNA ligase -
  HC660_RS00255 (HC660_00500) - 47409..48176 (+) 768 WP_168746749.1 TatD family hydrolase -
  HC660_RS00260 (HC660_00510) - 48422..49645 (+) 1224 WP_229150235.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=438449 HC660_RS00245 WP_003226760.1 44549..44839(-) (abrB) [Bacillus mojavensis strain UCMB5075]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=438449 HC660_RS00245 WP_003226760.1 44549..44839(-) (abrB) [Bacillus mojavensis strain UCMB5075]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTGATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTAAGCAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1