Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HC660_RS00020 Genome accession   NZ_CP051464
Coordinates   3234..4346 (+) Length   370 a.a.
NCBI ID   WP_168746732.1    Uniprot ID   A0AAP3CR22
Organism   Bacillus mojavensis strain UCMB5075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS00005 (HC660_00010) dnaA 201..1541 (+) 1341 WP_168746730.1 chromosomal replication initiator protein DnaA -
  HC660_RS00010 (HC660_00020) dnaN 1735..2871 (+) 1137 WP_168746731.1 DNA polymerase III subunit beta -
  HC660_RS00015 (HC660_00030) rlbA 3003..3218 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  HC660_RS00020 (HC660_00040) recF 3234..4346 (+) 1113 WP_168746732.1 DNA replication/repair protein RecF Machinery gene
  HC660_RS00025 (HC660_00050) remB 4364..4609 (+) 246 WP_010332676.1 extracellular matrix regulator RemB -
  HC660_RS00030 (HC660_00060) gyrB 4665..6581 (+) 1917 WP_010332677.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HC660_RS00035 (HC660_00070) gyrA 6793..9264 (+) 2472 WP_168746733.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42378.42 Da        Isoelectric Point: 7.3662

>NTDB_id=438447 HC660_RS00020 WP_168746732.1 3234..4346(+) (recF) [Bacillus mojavensis strain UCMB5075]
MHIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKKNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=438447 HC660_RS00020 WP_168746732.1 3234..4346(+) (recF) [Bacillus mojavensis strain UCMB5075]
TTGCATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCCCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGAAAAACGGAGCG
ATTCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTCAGCCAGTA
TGTCGGTGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGGT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCACTTTCTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAATTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAACTGACGCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTACGGTTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
CGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

97.838

100

0.978