Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HC661_RS11680 Genome accession   NZ_CP051463
Coordinates   2427285..2428085 (-) Length   266 a.a.
NCBI ID   WP_168768912.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2422285..2433085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS11650 (HC661_22300) - 2422825..2423457 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  HC661_RS11655 (HC661_22310) - 2423754..2423891 (+) 138 WP_168768911.1 hypothetical protein -
  HC661_RS11660 (HC661_22320) - 2423985..2425103 (+) 1119 WP_031378952.1 NADH-dependent flavin oxidoreductase -
  HC661_RS11665 (HC661_22330) - 2425229..2425441 (+) 213 WP_007408362.1 spore germination protein -
  HC661_RS11670 (HC661_22340) - 2425567..2425779 (+) 213 WP_003153181.1 spore germination protein -
  HC661_RS11675 (HC661_22350) alr 2425955..2427136 (+) 1182 WP_012117960.1 alanine racemase -
  HC661_RS11680 (HC661_22360) spo0A 2427285..2428085 (-) 801 WP_168768912.1 sporulation transcription factor Spo0A Regulator
  HC661_RS11685 (HC661_22370) spoIVB 2428369..2429646 (-) 1278 Protein_2268 SpoIVB peptidase -
  HC661_RS11690 (HC661_22380) recN 2429810..2431540 (-) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  HC661_RS11695 (HC661_22390) argR 2431572..2432021 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  HC661_RS11700 (HC661_22400) - 2432118..2432963 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29644.13 Da        Isoelectric Point: 6.1630

>NTDB_id=438410 HC661_RS11680 WP_168768912.1 2427285..2428085(-) (spo0A) [Bacillus velezensis strain UCMB5140]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYTGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=438410 HC661_RS11680 WP_168768912.1 2427285..2428085(-) (spo0A) [Bacillus velezensis strain UCMB5140]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATACCGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.382

100

0.947