Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HC661_RS05330 Genome accession   NZ_CP051463
Coordinates   1028950..1029528 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain UCMB5140     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1023950..1034528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS05310 (HC661_10340) - 1024450..1025743 (-) 1294 Protein_988 protoglobin domain-containing protein -
  HC661_RS05315 (HC661_10350) - 1025865..1027388 (-) 1524 WP_015417167.1 FAD-dependent oxidoreductase -
  HC661_RS05320 (HC661_10360) - 1027513..1028370 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  HC661_RS05325 (HC661_10370) - 1028401..1028634 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  HC661_RS05330 (HC661_10380) comK 1028950..1029528 (+) 579 WP_003155179.1 competence protein ComK Regulator
  HC661_RS05335 (HC661_10390) - 1029673..1030041 (+) 369 WP_012117235.1 iron chaperone -
  HC661_RS05340 (HC661_10400) - 1030068..1030439 (+) 372 WP_040238319.1 iron chaperone -
  HC661_RS05345 (HC661_10410) - 1030562..1031071 (+) 510 WP_015417169.1 mep operon protein MepB -
  HC661_RS05350 (HC661_10420) - 1031283..1031993 (-) 711 WP_015417170.1 YrpD family protein -
  HC661_RS05355 (HC661_10430) - 1032188..1032457 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  HC661_RS05360 (HC661_10440) - 1032490..1032807 (-) 318 WP_003155166.1 YbjQ family protein -
  HC661_RS05365 (HC661_10450) - 1032849..1034318 (-) 1470 WP_015417171.1 sodium:solute symporter -
  HC661_RS05370 (HC661_10460) - 1034315..1034515 (-) 201 WP_007409181.1 DUF3311 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=438391 HC661_RS05330 WP_003155179.1 1028950..1029528(+) (comK) [Bacillus velezensis strain UCMB5140]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=438391 HC661_RS05330 WP_003155179.1 1028950..1029528(+) (comK) [Bacillus velezensis strain UCMB5140]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823