Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HC661_RS00250 Genome accession   NZ_CP051463
Coordinates   46008..46298 (-) Length   96 a.a.
NCBI ID   WP_170936346.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5140     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41008..51298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS00210 (HC661_00410) darA 41024..41353 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  HC661_RS00215 (HC661_00420) - 41366..41806 (+) 441 WP_004264730.1 DUF327 family protein -
  HC661_RS00220 (HC661_00430) holB 41818..42807 (+) 990 WP_015416650.1 DNA polymerase III subunit delta' -
  HC661_RS00225 (HC661_00440) ricT 42810..43637 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HC661_RS00230 (HC661_00450) yabA 43652..44011 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  HC661_RS00235 (HC661_00460) - 44072..44815 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HC661_RS00240 (HC661_00470) - 44802..45101 (+) 300 WP_015416651.1 GIY-YIG nuclease family protein -
  HC661_RS00245 (HC661_00480) rsmI 45076..45957 (+) 882 WP_031379323.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HC661_RS00250 (HC661_00490) abrB 46008..46298 (-) 291 WP_170936346.1 transition state genes transcriptional regulator AbrB Regulator
  HC661_RS00255 (HC661_00500) metG 46781..48772 (+) 1992 WP_015416654.1 methionine--tRNA ligase -
  HC661_RS00260 (HC661_00510) - 48849..49616 (+) 768 WP_015416655.1 TatD family hydrolase -
  HC661_RS00265 (HC661_00520) - 49751..51076 (+) 1326 WP_134816645.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.62 Da        Isoelectric Point: 7.9639

>NTDB_id=438376 HC661_RS00250 WP_170936346.1 46008..46298(-) (abrB) [Bacillus velezensis strain UCMB5140]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIKNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=438376 HC661_RS00250 WP_170936346.1 46008..46298(-) (abrB) [Bacillus velezensis strain UCMB5140]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATACTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTAAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969