Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HC248_RS15080 Genome accession   NZ_CP051461
Coordinates   3314070..3314483 (+) Length   137 a.a.
NCBI ID   WP_420371991.1    Uniprot ID   -
Organism   Polaromonas vacuolata strain KCTC 22033     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309070..3319483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC248_RS15055 (HC248_03047) - 3309213..3309449 (+) 237 WP_168923190.1 Fis family transcriptional regulator -
  HC248_RS15060 (HC248_03048) purH 3309545..3311116 (+) 1572 WP_168923191.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  HC248_RS15065 (HC248_03049) hemL 3311232..3312566 (-) 1335 WP_168923192.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HC248_RS15070 (HC248_03050) thiD 3312547..3313539 (-) 993 WP_238342836.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HC248_RS15075 - 3313689..3313850 (+) 162 WP_202882478.1 rubredoxin -
  HC248_RS15080 (HC248_03051) pilG 3314070..3314483 (+) 414 WP_420371991.1 response regulator Regulator
  HC248_RS15085 (HC248_03052) - 3314483..3314848 (+) 366 WP_168923194.1 response regulator transcription factor -
  HC248_RS15090 (HC248_03053) - 3314866..3315396 (+) 531 WP_168923195.1 chemotaxis protein CheW -
  HC248_RS15095 (HC248_03054) - 3315420..3317672 (+) 2253 WP_168923196.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15175.48 Da        Isoelectric Point: 7.8470

>NTDB_id=438369 HC248_RS15080 WP_420371991.1 3314070..3314483(+) (pilG) [Polaromonas vacuolata strain KCTC 22033]
MSITSTSAVSSGLKVLVIDDSNTIRRSAEIFLKQGGHEVMLAEDGFDALGKVNDYQPHIIFCDILMPRLDGYQTCAIIKR
NIKFTNVPIVMLSSKDGVFDKARGRMVGSEDYLTKPFTKDQLLQTVKNLGYANNGEK

Nucleotide


Download         Length: 414 bp        

>NTDB_id=438369 HC248_RS15080 WP_420371991.1 3314070..3314483(+) (pilG) [Polaromonas vacuolata strain KCTC 22033]
GTGAGTATTACAAGTACAAGCGCTGTAAGTTCTGGACTCAAGGTTCTCGTCATCGATGACAGCAACACCATACGTCGCAG
CGCTGAAATATTTCTCAAACAGGGCGGCCACGAGGTCATGCTTGCCGAAGATGGCTTTGACGCTTTAGGCAAGGTCAACG
ACTACCAACCCCATATCATTTTTTGCGACATCTTGATGCCACGACTGGACGGCTATCAGACCTGCGCCATCATCAAGCGC
AACATCAAATTCACGAATGTACCGATTGTCATGCTGTCCTCCAAGGACGGTGTCTTTGACAAAGCCAGAGGCCGAATGGT
GGGCTCAGAAGACTATCTCACCAAGCCGTTTACAAAAGACCAGTTGTTGCAAACAGTCAAAAATCTGGGCTACGCAAATA
ATGGAGAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60.684

85.401

0.518