Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IPV48_RS24140 Genome accession   NZ_CP063386
Coordinates   5158279..5159721 (-) Length   480 a.a.
NCBI ID   WP_016852097.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST1076_d118limb1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5153279..5164721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV48_RS24110 (IPV48_24105) - 5153605..5154720 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  IPV48_RS24115 (IPV48_24110) - 5154713..5155474 (+) 762 WP_003112786.1 DUF2334 domain-containing protein -
  IPV48_RS24120 (IPV48_24115) - 5155471..5156472 (+) 1002 WP_019485776.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  IPV48_RS24125 (IPV48_24120) - 5156447..5156659 (-) 213 WP_003101176.1 hypothetical protein -
  IPV48_RS24130 (IPV48_24125) purU 5156709..5157560 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  IPV48_RS24135 (IPV48_24130) mvaT 5157820..5158194 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  IPV48_RS24140 (IPV48_24135) sbcB 5158279..5159721 (-) 1443 WP_016852097.1 exodeoxyribonuclease I Machinery gene
  IPV48_RS24145 (IPV48_24140) - 5159946..5160683 (+) 738 WP_003101171.1 hypothetical protein -
  IPV48_RS24150 (IPV48_24145) - 5160721..5161518 (+) 798 WP_003134638.1 RDD family protein -
  IPV48_RS24155 (IPV48_24150) - 5161515..5162495 (+) 981 WP_003134640.1 stage II sporulation protein M -
  IPV48_RS24160 (IPV48_24155) - 5162482..5164053 (+) 1572 WP_031686554.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=438335 IPV48_RS24140 WP_016852097.1 5158279..5159721(-) (sbcB) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=438335 IPV48_RS24140 WP_016852097.1 5158279..5159721(-) (sbcB) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCTCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGTTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44