Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IPV48_RS09440 Genome accession   NZ_CP063386
Coordinates   2013708..2014037 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain ST1076_d118limb1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2008708..2019037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV48_RS09425 (IPV48_09420) - 2009437..2010381 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  IPV48_RS09430 (IPV48_09425) - 2010482..2011507 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  IPV48_RS09435 (IPV48_09430) - 2011520..2013517 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  IPV48_RS09440 (IPV48_09435) comEA/comE1 2013708..2014037 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  IPV48_RS09450 (IPV48_09445) - 2014254..2015450 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  IPV48_RS09455 (IPV48_09450) uvrB 2015638..2017650 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=438298 IPV48_RS09440 WP_003138486.1 2013708..2014037(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=438298 IPV48_RS09440 WP_003138486.1 2013708..2014037(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385