Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGK50_RS06695 Genome accession   NZ_CP051435
Coordinates   1393372..1394685 (-) Length   437 a.a.
NCBI ID   WP_202148100.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-005     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388372..1399685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK50_RS06665 (HGK50_06655) nadC 1388835..1389656 (-) 822 WP_202148097.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGK50_RS06670 (HGK50_06660) nadA 1389656..1390666 (-) 1011 WP_202136198.1 quinolinate synthase NadA -
  HGK50_RS06675 (HGK50_06665) - 1390653..1391459 (-) 807 WP_202148098.1 phosphatidylserine decarboxylase -
  HGK50_RS06680 (HGK50_06670) - 1391456..1391959 (-) 504 WP_202145720.1 helix-turn-helix domain-containing protein -
  HGK50_RS06685 (HGK50_06675) - 1391972..1392466 (-) 495 WP_012443434.1 hypothetical protein -
  HGK50_RS06690 (HGK50_06680) mqnP 1392459..1393343 (-) 885 WP_202148099.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGK50_RS06695 (HGK50_06685) comEC/comE3 1393372..1394685 (-) 1314 WP_202148100.1 ComEC/Rec2 family competence protein Machinery gene
  HGK50_RS06700 (HGK50_06690) - 1394682..1396148 (-) 1467 WP_202148101.1 replicative DNA helicase -
  HGK50_RS06705 (HGK50_06695) - 1396159..1397553 (-) 1395 WP_202148102.1 NAD(P)H-hydrate dehydratase -
  HGK50_RS06710 (HGK50_06700) crdS 1397556..1398758 (-) 1203 WP_202148344.1 copper-sensing histidine kinase CrdS -
  HGK50_RS06715 (HGK50_06705) crdR 1398724..1399365 (-) 642 WP_202148103.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50177.16 Da        Isoelectric Point: 9.8315

>NTDB_id=438294 HGK50_RS06695 WP_202148100.1 1393372..1394685(-) (comEC/comE3) [Helicobacter pylori strain ASHA-005]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=438294 HGK50_RS06695 WP_202148100.1 1393372..1394685(-) (comEC/comE3) [Helicobacter pylori strain ASHA-005]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGTTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAACGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGATTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCCAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952