Detailed information NTG0438293

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IPV48_RS06930
• Genome accession: NZ_CP063386
• Coordinates: 1479980..1480984 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ST1076_d118limb1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1474980..1485984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPV48_RS06900 (IPV48_06890)	fghA	1475072..1475923 (+)	852	WP_031685470.1	S-formylglutathione hydrolase	-
IPV48_RS06905 (IPV48_06895)	ispF	1475994..1476467 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IPV48_RS06910 (IPV48_06900)	truD	1476464..1477531 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
IPV48_RS06915 (IPV48_06905)	surE	1477519..1478268 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IPV48_RS06920 (IPV48_06910)	-	1478301..1478936 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IPV48_RS06925 (IPV48_06915)	-	1478982..1479875 (+)	894	WP_031685471.1	peptidoglycan DD-metalloendopeptidase family protein	-
IPV48_RS06930 (IPV48_06920)	rpoS	1479980..1480984 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IPV48_RS06935 (IPV48_06925)	fdxA	1481411..1481734 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IPV48_RS06940 (IPV48_06930)	mutS	1481801..1484368 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
IPV48_RS06945 (IPV48_06935)	-	1484494..1485501 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=438293 IPV48_RS06930 WP_003113871.1 1479980..1480984(+) (rpoS) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=438293 IPV48_RS06930 WP_003113871.1 1479980..1480984(+) (rpoS) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653