Detailed information NTG0438281

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HGK50_RS00190
• Genome accession: NZ_CP051435
• Coordinates: 32477..33532 (+)
• Length: 351 a.a.
• NCBI ID: WP_202135611.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-005
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27477..38532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HGK50_RS00160 (HGK50_00160)	-	27902..28315 (+)	414	WP_097682194.1	universal stress protein	-
HGK50_RS00165 (HGK50_00165)	-	28323..28598 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HGK50_RS00170 (HGK50_00170)	-	28598..30820 (+)	2223	WP_202135610.1	ATP-dependent Clp protease ATP-binding subunit	-
HGK50_RS00175 (HGK50_00175)	panD	30810..31160 (+)	351	WP_202148173.1	aspartate 1-decarboxylase	-
HGK50_RS00180 (HGK50_00180)	-	31171..31464 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HGK50_RS00185 (HGK50_00185)	-	31464..32471 (+)	1008	WP_202133382.1	PDZ domain-containing protein	-
HGK50_RS00190 (HGK50_00190)	comB6	32477..33532 (+)	1056	WP_202135611.1	P-type conjugative transfer protein TrbL	Machinery gene
HGK50_RS00195 (HGK50_00195)	comB7	33548..33661 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HGK50_RS00200 (HGK50_00200)	comB8	33654..34400 (+)	747	WP_202132916.1	virB8 family protein	Machinery gene
HGK50_RS00205 (HGK50_00205)	comB9	34400..35365 (+)	966	WP_202148174.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HGK50_RS00210 (HGK50_00210)	comB10	35358..36494 (+)	1137	WP_202135613.1	DNA type IV secretion system protein ComB10	Machinery gene
HGK50_RS00215 (HGK50_00215)	-	36564..37976 (+)	1413	WP_202132919.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39765.74 Da
• Isoelectric Point: 9.0413

>NTDB_id=438281 HGK50_RS00190 WP_202135611.1 32477..33532(+) (comB6) [Helicobacter pylori strain ASHA-005]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=438281 HGK50_RS00190 WP_202135611.1 32477..33532(+) (comB6) [Helicobacter pylori strain ASHA-005]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAATTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTTTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983