Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGK49_RS06675 Genome accession   NZ_CP051434
Coordinates   1372931..1374244 (-) Length   437 a.a.
NCBI ID   WP_202132755.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367931..1379244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS06645 (HGK49_06645) nadC 1368394..1369215 (-) 822 WP_202132751.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGK49_RS06650 (HGK49_06650) nadA 1369215..1370225 (-) 1011 WP_202132752.1 quinolinate synthase NadA -
  HGK49_RS06655 (HGK49_06655) - 1370215..1371018 (-) 804 WP_202132753.1 phosphatidylserine decarboxylase -
  HGK49_RS06660 (HGK49_06660) - 1371015..1371518 (-) 504 WP_000953078.1 hypothetical protein -
  HGK49_RS06665 (HGK49_06665) - 1371531..1372025 (-) 495 WP_202132754.1 hypothetical protein -
  HGK49_RS06670 (HGK49_06670) mqnP 1372018..1372902 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGK49_RS06675 (HGK49_06675) comEC/comE3 1372931..1374244 (-) 1314 WP_202132755.1 ComEC/Rec2 family competence protein Machinery gene
  HGK49_RS06680 (HGK49_06680) - 1374241..1375707 (-) 1467 WP_202132756.1 replicative DNA helicase -
  HGK49_RS06685 (HGK49_06685) - 1375718..1377112 (-) 1395 WP_202132757.1 NAD(P)H-hydrate dehydratase -
  HGK49_RS06690 (HGK49_06690) crdS 1377115..1378317 (-) 1203 WP_079990317.1 copper-sensing histidine kinase CrdS -
  HGK49_RS06695 (HGK49_06695) crdR 1378283..1378924 (-) 642 WP_001169813.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50323.35 Da        Isoelectric Point: 9.8860

>NTDB_id=438276 HGK49_RS06675 WP_202132755.1 1372931..1374244(-) (comEC/comE3) [Helicobacter pylori strain ASHA-004]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLLYTQLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=438276 HGK49_RS06675 WP_202132755.1 1372931..1374244(-) (comEC/comE3) [Helicobacter pylori strain ASHA-004]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGTTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAACGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTCTTTATACCCAATTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTGCCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954