Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HGI30_RS09700 Genome accession   NZ_CP051428
Coordinates   2227626..2229326 (+) Length   566 a.a.
NCBI ID   WP_168909812.1    Uniprot ID   A0A6H2H3P9
Organism   Paenibacillus albicereus strain UniB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2222626..2234326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI30_RS09675 (HGI30_09675) - 2222725..2223636 (+) 912 WP_168907373.1 polyprenyl synthetase family protein -
  HGI30_RS09680 (HGI30_09680) dxs 2223743..2225641 (+) 1899 WP_168907374.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HGI30_RS09685 (HGI30_09685) - 2225650..2226525 (+) 876 WP_168909810.1 TlyA family RNA methyltransferase -
  HGI30_RS09690 (HGI30_09690) - 2226671..2227138 (+) 468 WP_235680373.1 hypothetical protein -
  HGI30_RS09695 (HGI30_09695) ahrC 2227141..2227590 (+) 450 WP_168907375.1 transcriptional regulator AhrC/ArgR -
  HGI30_RS09700 (HGI30_09700) recN 2227626..2229326 (+) 1701 WP_168909812.1 DNA repair protein RecN Machinery gene
  HGI30_RS09705 (HGI30_09705) spoIVB 2229443..2230768 (+) 1326 WP_168907376.1 SpoIVB peptidase -
  HGI30_RS09710 (HGI30_09710) spo0A 2230965..2231786 (+) 822 WP_168907377.1 sporulation transcription factor Spo0A -
  HGI30_RS09715 (HGI30_09715) - 2232235..2232519 (-) 285 WP_168907378.1 DUF2627 domain-containing protein -
  HGI30_RS09720 (HGI30_09720) lpdA 2232743..2234170 (+) 1428 WP_168907379.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63396.15 Da        Isoelectric Point: 5.9296

>NTDB_id=438202 HGI30_RS09700 WP_168909812.1 2227626..2229326(+) (recN) [Paenibacillus albicereus strain UniB2]
MLRELSIRNLAVIEEVTVGFHEGFHVLTGETGAGKSILIDALILLIGGRGSSDMVRYGCDKAEMEASFDLGPAHPVWHVL
QRLGLKGSSEDLLTIRRELSAQGKSSCRINGSIANLTMLREIGECLVNVHGQHEHQSLLRTEQHLEWLDLFAGEQVEELK
RTYQAAFFRYGELRSSLKSLLEGSRQNMQMLDLYKFQLEEIRSAALRKEEWEQLHQEKETLAHADKIMTHVAGAYGLLHD
SGALESMASAIAKLEEIAPHQPSVLEPLVEQLKSAYYQTEDTVHQLRGCQEDIQSDPQRLAAIEDRITLLNGLRRKYGDT
LPDIMAYYKKIRHEASLIENRDDHIRELKSSLKEAYAEAAELAERLSARRKQAGELLSASVERQLKDLGMERTQFRAHVD
AQSSEEAYKLTLHGIDEAGFLLAPNPGEPLKPLSKIASGGEMSRIMLALKSIFAEIDQVPVLIFDEVDTGVSGRAAQAIA
EKMSQLSGKCQVFSITHLPQVACMADYHYEISKHVVHERTSTSVKELSDRERIEELARMLGGVEVTDKTRHHAQEMLVLA
DRQKGA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=438202 HGI30_RS09700 WP_168909812.1 2227626..2229326(+) (recN) [Paenibacillus albicereus strain UniB2]
ATGCTTCGCGAACTGTCCATTCGAAATCTTGCCGTCATCGAGGAAGTGACCGTCGGATTCCACGAAGGCTTTCATGTGCT
GACGGGAGAGACCGGCGCCGGCAAGTCGATTCTGATCGATGCGCTCATCCTGCTTATCGGCGGGAGAGGATCTTCCGACA
TGGTCCGTTACGGATGCGACAAAGCGGAGATGGAGGCCTCCTTTGATCTTGGACCGGCCCATCCGGTCTGGCACGTGCTG
CAGCGCCTTGGGCTGAAAGGCAGCTCCGAGGATCTGCTGACGATCCGGAGGGAGCTGTCGGCTCAAGGTAAAAGCTCGTG
CCGGATCAACGGCTCCATCGCCAATCTGACGATGCTGCGGGAAATCGGCGAATGCCTCGTGAACGTGCACGGCCAGCACG
AGCATCAGTCGCTGCTGCGGACCGAGCAGCACTTGGAATGGCTCGACCTGTTCGCCGGCGAGCAGGTCGAGGAGCTGAAG
CGGACCTACCAGGCAGCGTTTTTCCGCTACGGAGAGCTGCGCTCTTCGTTAAAATCGCTCTTAGAGGGCAGCCGACAGAA
CATGCAGATGCTCGACCTGTACAAGTTCCAGCTGGAGGAGATCCGTTCCGCAGCGCTGCGCAAGGAGGAATGGGAGCAGC
TACATCAAGAGAAGGAGACGCTGGCGCATGCCGATAAGATCATGACGCATGTGGCCGGCGCCTACGGGCTGCTGCATGAC
AGCGGCGCACTGGAATCGATGGCGTCCGCCATCGCCAAGCTGGAAGAGATTGCTCCGCATCAGCCTTCCGTTTTGGAGCC
GCTCGTGGAGCAGCTCAAGAGCGCCTATTACCAAACCGAGGATACCGTCCACCAGCTGCGCGGCTGCCAGGAGGATATCC
AGAGCGATCCCCAGCGTTTGGCGGCGATCGAGGATCGAATTACGCTGTTGAACGGGCTTCGCCGCAAGTACGGCGATACC
TTGCCCGATATTATGGCCTATTACAAAAAAATCAGACATGAAGCAAGCCTGATCGAAAATCGGGACGATCATATCCGGGA
GCTTAAATCCTCGCTCAAGGAAGCCTATGCCGAAGCGGCAGAGCTGGCAGAGCGGCTTTCAGCAAGACGCAAGCAAGCCG
GAGAGCTTTTATCCGCCTCGGTGGAGAGGCAGCTCAAGGATTTAGGCATGGAACGCACGCAGTTTAGAGCGCATGTAGAT
GCCCAGTCCTCTGAGGAGGCCTACAAGCTGACGCTTCATGGCATCGATGAAGCCGGCTTCCTGCTCGCCCCGAATCCAGG
CGAACCGCTCAAGCCGCTCAGCAAGATTGCCTCTGGCGGAGAGATGTCGCGCATCATGCTCGCGCTCAAGAGCATTTTCG
CCGAGATCGATCAAGTTCCCGTGCTTATTTTCGATGAGGTCGATACGGGCGTCAGCGGACGGGCAGCTCAAGCCATAGCC
GAAAAAATGTCGCAATTATCTGGCAAATGCCAGGTGTTCTCCATCACGCATCTGCCGCAAGTGGCTTGCATGGCCGATTA
CCATTATGAGATCAGCAAGCACGTGGTCCATGAGCGGACCTCCACCTCGGTGAAGGAGCTGAGCGATCGGGAGCGCATCG
AAGAGCTGGCACGGATGCTCGGCGGCGTCGAGGTGACGGACAAGACAAGGCATCATGCACAGGAAATGCTTGTGCTGGCA
GATCGCCAAAAAGGAGCCTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H2H3P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.222

100

0.481