Detailed information NTG0438191

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IPV49_RS06950
• Genome accession: NZ_CP063385
• Coordinates: 1487617..1488621 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain St1076_d123blood
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1482617..1493621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPV49_RS06920 (IPV49_06915)	fghA	1482709..1483560 (+)	852	WP_031685470.1	S-formylglutathione hydrolase	-
IPV49_RS06925 (IPV49_06920)	ispF	1483631..1484104 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IPV49_RS06930 (IPV49_06925)	truD	1484101..1485168 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
IPV49_RS06935 (IPV49_06930)	surE	1485156..1485905 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IPV49_RS06940 (IPV49_06935)	-	1485938..1486573 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IPV49_RS06945 (IPV49_06940)	-	1486619..1487512 (+)	894	WP_031685471.1	peptidoglycan DD-metalloendopeptidase family protein	-
IPV49_RS06950 (IPV49_06945)	rpoS	1487617..1488621 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IPV49_RS06955 (IPV49_06950)	fdxA	1489048..1489371 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IPV49_RS06960 (IPV49_06955)	mutS	1489438..1492005 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
IPV49_RS06965 (IPV49_06960)	-	1492131..1493138 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=438191 IPV49_RS06950 WP_003113871.1 1487617..1488621(+) (rpoS) [Pseudomonas aeruginosa strain St1076_d123blood]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=438191 IPV49_RS06950 WP_003113871.1 1487617..1488621(+) (rpoS) [Pseudomonas aeruginosa strain St1076_d123blood]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653