Detailed information NTG0438166

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOI11_RS22445
• Genome accession: NZ_CP063369
• Coordinates: 4699003..4699995 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1409
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4694003..4704995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOI11_RS22415 (FOI11_022415)	ispD	4694064..4694774 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FOI11_RS22420 (FOI11_022420)	ispF	4694774..4695253 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOI11_RS22425 (FOI11_022425)	truD	4695250..4696299 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FOI11_RS22430 (FOI11_022430)	surE	4696280..4697041 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FOI11_RS22435 (FOI11_022435)	pcm	4697035..4697661 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FOI11_RS22440 (FOI11_022440)	nlpD	4697846..4698940 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FOI11_RS22445 (FOI11_022445)	rpoS	4699003..4699995 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FOI11_RS22450 (FOI11_022450)	ygbN	4700089..4701453 (-)	1365	WP_000104441.1	GntP family transporter	-
FOI11_RS22455 (FOI11_022455)	ygbM	4701542..4702318 (-)	777	WP_105078169.1	HPr family phosphocarrier protein	-
FOI11_RS22460 (FOI11_022460)	ygbL	4702323..4702961 (-)	639	WP_001278994.1	aldolase	-
FOI11_RS22465 (FOI11_022465)	otnK	4702958..4704220 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=438166 FOI11_RS22445 WP_000081550.1 4699003..4699995(+) (rpoS) [Escherichia coli strain 1409]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=438166 FOI11_RS22445 WP_000081550.1 4699003..4699995(+) (rpoS) [Escherichia coli strain 1409]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715