Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FOI11_RS02875 Genome accession   NZ_CP063369
Coordinates   633192..634619 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain 1409     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 628192..639619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOI11_RS02845 (FOI11_002840) yeeZ 628247..629071 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  FOI11_RS02850 (FOI11_002845) yeeY 629117..630046 (+) 930 WP_032176419.1 LysR substrate-binding domain-containing protein -
  FOI11_RS02855 (FOI11_002850) yoeI 630261..630323 (+) 63 WP_010723108.1 membrane protein YoeI -
  FOI11_RS02860 (FOI11_002855) plaP 630313..631671 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FOI11_RS02865 (FOI11_002860) tsuA 631850..632908 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  FOI11_RS02870 (FOI11_002865) tsuB 632922..633149 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FOI11_RS02875 (FOI11_002870) sbcB 633192..634619 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  FOI11_RS02880 (FOI11_002875) dacD 634808..635974 (+) 1167 WP_032176408.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FOI11_RS02885 (FOI11_002880) sbmC 636093..636566 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  FOI11_RS02890 (FOI11_002885) yeeA 636765..637823 (+) 1059 WP_001200891.1 FUSC family protein -
  FOI11_RS02895 (FOI11_002890) tmaR 637995..638324 (+) 330 WP_000450409.1 DUF496 family protein -
  FOI11_RS02900 (FOI11_002895) - 638425..638721 (-) 297 Protein_574 EutP/PduV family microcompartment system protein -
  FOI11_RS02905 (FOI11_002900) - 638700..639059 (+) 360 WP_032160190.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=438099 FOI11_RS02875 WP_000980581.1 633192..634619(-) (sbcB) [Escherichia coli strain 1409]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=438099 FOI11_RS02875 WP_000980581.1 633192..634619(-) (sbcB) [Escherichia coli strain 1409]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579