Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IOO21_RS05135 Genome accession   NZ_CP063357
Coordinates   994758..995306 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R4B202     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 989758..1000306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS05100 - 989948..990373 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  IOO21_RS05105 - 990437..991057 (+) 621 WP_002869051.1 NAD(P)H-dependent oxidoreductase -
  IOO21_RS05110 - 991057..991662 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  IOO21_RS05115 pgsA 991787..992323 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IOO21_RS05120 rseP 992320..993426 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  IOO21_RS05125 - 993419..994285 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  IOO21_RS05130 rpsF 994372..994749 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  IOO21_RS05135 ssb 994758..995306 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  IOO21_RS05140 rpsR 995317..995577 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  IOO21_RS05145 lon 995637..998012 (-) 2376 WP_002853487.1 endopeptidase La -
  IOO21_RS05150 - 998029..998676 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  IOO21_RS05155 fliW 998837..999226 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  IOO21_RS05160 proC 999226..999957 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  IOO21_RS05165 ctsT 999954..1000256 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=438063 IOO21_RS05135 WP_002854048.1 994758..995306(+) (ssb) [Campylobacter jejuni strain R4B202]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=438063 IOO21_RS05135 WP_002854048.1 994758..995306(+) (ssb) [Campylobacter jejuni strain R4B202]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39