Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   IOO21_RS03050 Genome accession   NZ_CP063357
Coordinates   581808..582191 (+) Length   127 a.a.
NCBI ID   WP_002869355.1    Uniprot ID   A1VYZ5
Organism   Campylobacter jejuni strain R4B202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 576808..587191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS03030 - 576887..578821 (-) 1935 WP_002869357.1 ribonuclease R family protein -
  IOO21_RS03035 ilvC 578940..579962 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  IOO21_RS03040 - 579966..581048 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  IOO21_RS03045 dprA 581038..581811 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  IOO21_RS03050 dprB 581808..582191 (+) 384 WP_002869355.1 Holliday junction resolvase RuvX Machinery gene
  IOO21_RS03055 - 582220..583059 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  IOO21_RS03060 msrA 583235..583732 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IOO21_RS03065 ppa 583773..584291 (-) 519 WP_002855031.1 inorganic diphosphatase -
  IOO21_RS03070 adk 584301..584879 (-) 579 WP_002855137.1 adenylate kinase -
  IOO21_RS03075 aspS 584876..586627 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14143.68 Da        Isoelectric Point: 9.8358

>NTDB_id=438056 IOO21_RS03050 WP_002869355.1 581808..582191(+) (dprB) [Campylobacter jejuni strain R4B202]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSREEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=438056 IOO21_RS03050 WP_002869355.1 581808..582191(+) (dprB) [Campylobacter jejuni strain R4B202]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGAGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1VYZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441