Detailed information NTG0437973

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IN859_RS00695
• Genome accession: NZ_CP063349
• Coordinates: 133756..134748 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BS15R-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 128756..139748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IN859_RS00670 (IN859_00670)	ygbN	129412..130776 (+)	1365	WP_000104429.1	GntP family transporter	-
IN859_RS00675 (IN859_00675)	-	130815..131051 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IN859_RS00680 (IN859_00680)	-	131062..132488 (-)	1427	Protein_123	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IN859_RS00685 (IN859_00685)	-	132488..133081 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IN859_RS00690 (IN859_00690)	-	133228..133635 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
IN859_RS00695 (IN859_00695)	rpoS	133756..134748 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IN859_RS00700 (IN859_00700)	nlpD	134811..135905 (-)	1095	WP_311238042.1	murein hydrolase activator NlpD	-
IN859_RS00705 (IN859_00705)	pcm	136090..136716 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IN859_RS00710 (IN859_00710)	surE	136710..137471 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IN859_RS00715 (IN859_00715)	truD	137452..138501 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IN859_RS00720 (IN859_00720)	ispF	138498..138977 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IN859_RS00725 (IN859_00725)	ispD	138977..139687 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=437973 IN859_RS00695 WP_000081550.1 133756..134748(-) (rpoS) [Escherichia coli strain BS15R-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=437973 IN859_RS00695 WP_000081550.1 133756..134748(-) (rpoS) [Escherichia coli strain BS15R-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715