Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HFQ94_RS13600 Genome accession   NZ_CP051394
Coordinates   2791212..2791817 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Anatum strain CVM 22448     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786212..2796817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFQ94_RS13585 (HFQ94_13595) helD 2786429..2788483 (-) 2055 WP_024155604.1 DNA helicase IV -
  HFQ94_RS13590 (HFQ94_13600) - 2788607..2789053 (+) 447 WP_023243628.1 YccF domain-containing protein -
  HFQ94_RS13595 (HFQ94_13605) yccS 2789072..2791225 (+) 2154 WP_000950869.1 YccS family putative transporter -
  HFQ94_RS13600 (HFQ94_13610) sxy/tfoX 2791212..2791817 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HFQ94_RS13605 (HFQ94_13615) sulA 2792034..2792543 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HFQ94_RS13610 (HFQ94_13620) ompA 2792900..2793952 (+) 1053 WP_001670727.1 porin OmpA -
  HFQ94_RS13615 (HFQ94_13625) matP 2794024..2794476 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HFQ94_RS13620 (HFQ94_13630) - 2794662..2796422 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=437972 HFQ94_RS13600 WP_001202375.1 2791212..2791817(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum strain CVM 22448]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=437972 HFQ94_RS13600 WP_001202375.1 2791212..2791817(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Anatum strain CVM 22448]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751