Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HFR18_RS07865 Genome accession   NZ_CP051391
Coordinates   1656859..1657464 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Muenster strain CVM 22504     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651859..1662464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFR18_RS07845 (HFR18_07835) - 1652254..1654014 (-) 1761 WP_000156458.1 AAA family ATPase -
  HFR18_RS07850 (HFR18_07840) matP 1654200..1654652 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HFR18_RS07855 (HFR18_07845) ompA 1654724..1655776 (-) 1053 WP_001562588.1 porin OmpA -
  HFR18_RS07860 (HFR18_07850) sulA 1656133..1656642 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HFR18_RS07865 (HFR18_07855) sxy/tfoX 1656859..1657464 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HFR18_RS07870 (HFR18_07860) yccS 1657451..1659604 (-) 2154 WP_023137048.1 YccS family putative transporter -
  HFR18_RS07875 (HFR18_07865) - 1659623..1660069 (-) 447 WP_001261222.1 YccF domain-containing protein -
  HFR18_RS07880 (HFR18_07870) helD 1660193..1662247 (+) 2055 WP_023137047.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=437941 HFR18_RS07865 WP_001202375.1 1656859..1657464(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenster strain CVM 22504]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=437941 HFR18_RS07865 WP_001202375.1 1656859..1657464(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenster strain CVM 22504]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751