Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HFR50_RS13405 Genome accession   NZ_CP051389
Coordinates   2765585..2766190 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Muenchen strain CVM 22536     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2760585..2771190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFR50_RS13390 (HFR50_13410) helD 2760802..2762856 (-) 2055 WP_052934607.1 DNA helicase IV -
  HFR50_RS13395 (HFR50_13415) - 2762980..2763426 (+) 447 WP_001617378.1 YccF domain-containing protein -
  HFR50_RS13400 (HFR50_13420) yccS 2763445..2765598 (+) 2154 WP_000950881.1 YccS family putative transporter -
  HFR50_RS13405 (HFR50_13425) sxy/tfoX 2765585..2766190 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HFR50_RS13410 (HFR50_13430) sulA 2766407..2766916 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HFR50_RS13415 (HFR50_13435) ompA 2767274..2768326 (+) 1053 WP_001670727.1 porin OmpA -
  HFR50_RS13420 (HFR50_13440) matP 2768398..2768850 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HFR50_RS13425 (HFR50_13445) - 2769036..2770796 (+) 1761 WP_000156454.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=437928 HFR50_RS13405 WP_001202375.1 2765585..2766190(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenchen strain CVM 22536]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=437928 HFR50_RS13405 WP_001202375.1 2765585..2766190(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenchen strain CVM 22536]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751