Detailed information NTG0437906

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IN877_RS05070
• Genome accession: NZ_CP063341
• Coordinates: 1055025..1056017 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BS90R-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1050025..1061017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IN877_RS05040 (IN877_05040)	ispD	1050086..1050796 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IN877_RS05045 (IN877_05045)	ispF	1050796..1051275 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IN877_RS05050 (IN877_05050)	truD	1051272..1052321 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IN877_RS05055 (IN877_05055)	surE	1052302..1053063 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IN877_RS05060 (IN877_05060)	pcm	1053057..1053683 (+)	627	WP_032142000.1	protein-L-isoaspartate O-methyltransferase	-
IN877_RS05065 (IN877_05065)	nlpD	1053868..1054962 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IN877_RS05070 (IN877_05070)	rpoS	1055025..1056017 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IN877_RS05075 (IN877_05075)	-	1056138..1056545 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
IN877_RS05080 (IN877_05080)	-	1056692..1057285 (+)	594	WP_032141999.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IN877_RS05085 (IN877_05085)	-	1057285..1058712 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IN877_RS05090 (IN877_05090)	-	1058723..1058959 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IN877_RS05095 (IN877_05095)	ygbN	1058998..1060362 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=437906 IN877_RS05070 WP_000081550.1 1055025..1056017(+) (rpoS) [Escherichia coli strain BS90R-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=437906 IN877_RS05070 WP_000081550.1 1055025..1056017(+) (rpoS) [Escherichia coli strain BS90R-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715