Detailed information NTG0437830

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IN878_RS09155
• Genome accession: NZ_CP063332
• Coordinates: 1856183..1857175 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BS74R-D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1851183..1862175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IN878_RS09135 (IN878_09145)	otnK	1851958..1853220 (+)	1263	WP_203037249.1	3-oxo-tetronate kinase	-
IN878_RS09140 (IN878_09150)	ygbL	1853217..1853855 (+)	639	WP_001278994.1	aldolase	-
IN878_RS09145 (IN878_09155)	ygbM	1853860..1854636 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
IN878_RS09150 (IN878_09160)	ygbN	1854725..1856089 (+)	1365	WP_000104459.1	GntP family transporter	-
IN878_RS09155 (IN878_09165)	rpoS	1856183..1857175 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IN878_RS09160 (IN878_09170)	nlpD	1857238..1858332 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IN878_RS09165 (IN878_09175)	pcm	1858517..1859143 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IN878_RS09170 (IN878_09180)	surE	1859137..1859898 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IN878_RS09175 (IN878_09185)	truD	1859879..1860928 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IN878_RS09180 (IN878_09190)	ispF	1860925..1861404 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IN878_RS09185 (IN878_09195)	ispD	1861404..1862114 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=437830 IN878_RS09155 WP_000081550.1 1856183..1857175(-) (rpoS) [Escherichia coli strain BS74R-D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=437830 IN878_RS09155 WP_000081550.1 1856183..1857175(-) (rpoS) [Escherichia coli strain BS74R-D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715