Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IN878_RS05450 Genome accession   NZ_CP063332
Coordinates   1067159..1068586 (+) Length   475 a.a.
NCBI ID   WP_203037235.1    Uniprot ID   -
Organism   Escherichia coli strain BS74R-D     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062159..1073586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IN878_RS05410 (IN878_05415) yeeW 1062343..1062537 (+) 195 WP_000988599.1 DUF5983 family protein -
  IN878_RS05415 (IN878_05420) - 1062583..1062663 (+) 81 Protein_1082 hypothetical protein -
  IN878_RS26235 (IN878_05425) - 1062952..1063125 (-) 174 WP_032082634.1 transposase domain-containing protein -
  IN878_RS26240 (IN878_05430) - 1063152..1063334 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IN878_RS05430 (IN878_05435) tmaR 1063435..1063764 (-) 330 WP_000450409.1 DUF496 family protein -
  IN878_RS05435 (IN878_05440) yeeA 1063936..1064994 (-) 1059 Protein_1086 FUSC family protein -
  IN878_RS05440 (IN878_05445) sbmC 1065192..1065665 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IN878_RS05445 (IN878_05450) dacD 1065784..1066950 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IN878_RS05450 (IN878_05455) sbcB 1067159..1068586 (+) 1428 WP_203037235.1 exodeoxyribonuclease I Machinery gene
  IN878_RS05455 (IN878_05460) tsuB 1068629..1068856 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IN878_RS05460 (IN878_05465) tsuA 1068870..1069929 (-) 1060 Protein_1091 thiosulfate utilization transporter TsuA/YeeE -
  IN878_RS05465 (IN878_05470) plaP 1070108..1071466 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IN878_RS05470 (IN878_05475) yoeI 1071456..1071518 (-) 63 WP_010723108.1 membrane protein YoeI -
  IN878_RS05475 (IN878_05480) yeeY 1071733..1072662 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IN878_RS05480 (IN878_05485) yeeZ 1072708..1073532 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.79 Da        Isoelectric Point: 5.4720

>NTDB_id=437817 IN878_RS05450 WP_203037235.1 1067159..1068586(+) (sbcB) [Escherichia coli strain BS74R-D]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPVVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=437817 IN878_RS05450 WP_203037235.1 1067159..1068586(+) (sbcB) [Escherichia coli strain BS74R-D]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCGTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579