Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HFS24_RS13765 Genome accession   NZ_CP051368
Coordinates   2849671..2850276 (-) Length   201 a.a.
NCBI ID   WP_219826712.1    Uniprot ID   -
Organism   Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844671..2855276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFS24_RS13750 (HFS24_13720) helD 2844891..2846942 (-) 2052 WP_000420510.1 DNA helicase IV -
  HFS24_RS13755 (HFS24_13725) - 2847066..2847512 (+) 447 WP_001261217.1 YccF domain-containing protein -
  HFS24_RS13760 (HFS24_13730) yccS 2847531..2849684 (+) 2154 WP_000950872.1 YccS family putative transporter -
  HFS24_RS13765 (HFS24_13735) sxy/tfoX 2849671..2850276 (-) 606 WP_219826712.1 TfoX/Sxy family DNA transformation protein Regulator
  HFS24_RS13770 (HFS24_13740) sulA 2850493..2851002 (+) 510 WP_000288725.1 SOS-induced cell division inhibitor SulA -
  HFS24_RS13775 (HFS24_13745) ompA 2851359..2852408 (+) 1050 WP_023187149.1 porin OmpA -
  HFS24_RS13780 (HFS24_13750) matP 2852480..2852932 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HFS24_RS13785 (HFS24_13755) - 2853118..2854878 (+) 1761 WP_000156444.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23147.80 Da        Isoelectric Point: 9.0103

>NTDB_id=437770 HFS24_RS13765 WP_219826712.1 2849671..2850276(-) (sxy/tfoX) [Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFALVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=437770 HFS24_RS13765 WP_219826712.1 2849671..2850276(-) (sxy/tfoX) [Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGCTGGTGGCTAATGGCGAGCTTTATCTCCGCGCTTGTG
AACAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGTCTGGCTCACGTTTATGAAGTGTGGGCGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAATTGGTACGTTTATCAAAGTATTCCCTTGACGCGGCAAT
GAAGGAAAAACATAGCCGTTTTTCACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCGTTGGAAGGCGCTATTGTTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756