Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IM723_RS05570 Genome accession   NZ_CP063275
Coordinates   1066494..1067306 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061494..1072306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS05545 - 1062430..1062816 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  IM723_RS05550 - 1062908..1063788 (-) 881 Protein_1043 GNAT family N-acetyltransferase -
  IM723_RS05555 yidA 1063996..1064805 (+) 810 WP_011226081.1 sugar-phosphatase -
  IM723_RS05560 - 1064807..1066021 (+) 1215 WP_211836787.1 aminoacyltransferase -
  IM723_RS05565 - 1066073..1066434 (-) 362 Protein_1046 YbaN family protein -
  IM723_RS05570 vicX 1066494..1067306 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  IM723_RS05575 vicK 1067312..1068652 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  IM723_RS05580 yycF 1068645..1069352 (-) 708 WP_173940375.1 response regulator YycF -
  IM723_RS05585 - 1069879..1070646 (+) 768 WP_022096757.1 amino acid ABC transporter ATP-binding protein -
  IM723_RS05590 - 1070658..1071491 (+) 834 WP_002953142.1 transporter substrate-binding domain-containing protein -
  IM723_RS05595 - 1071509..1072207 (+) 699 WP_002953144.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=437746 IM723_RS05570 WP_011681204.1 1066494..1067306(-) (vicX) [Streptococcus thermophilus strain DMST-H2]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=437746 IM723_RS05570 WP_011681204.1 1066494..1067306(-) (vicX) [Streptococcus thermophilus strain DMST-H2]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCTGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774