Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IM720_RS25970 Genome accession   NZ_CP063233
Coordinates   5769955..5771382 (-) Length   475 a.a.
NCBI ID   WP_024077170.1    Uniprot ID   A0ACA7PCE1
Organism   Pseudomonas fluorescens strain KF1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5764955..5776382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS25945 (IM720_25945) - 5765209..5766330 (+) 1122 WP_024077165.1 glycosyltransferase family 4 protein -
  IM720_RS25950 (IM720_25950) - 5766323..5767066 (+) 744 WP_193689766.1 DUF2334 domain-containing protein -
  IM720_RS25955 (IM720_25955) - 5767063..5768163 (+) 1101 WP_193689767.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  IM720_RS25960 (IM720_25960) purU 5768290..5769138 (-) 849 WP_024077168.1 formyltetrahydrofolate deformylase -
  IM720_RS25965 (IM720_25965) mvaT 5769490..5769864 (+) 375 WP_024077169.1 histone-like nucleoid-structuring protein MvaT -
  IM720_RS25970 (IM720_25970) sbcB 5769955..5771382 (-) 1428 WP_024077170.1 exodeoxyribonuclease I Machinery gene
  IM720_RS25975 (IM720_25975) - 5771550..5772242 (+) 693 WP_041161009.1 RDD family protein -
  IM720_RS25980 (IM720_25980) - 5772239..5773219 (+) 981 WP_193689768.1 stage II sporulation protein M -
  IM720_RS25985 (IM720_25985) - 5773206..5774732 (+) 1527 WP_193689769.1 DUF4129 domain-containing protein -
  IM720_RS25990 (IM720_25990) - 5774732..5775889 (+) 1158 WP_193689770.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54478.68 Da        Isoelectric Point: 5.3829

>NTDB_id=437674 IM720_RS25970 WP_024077170.1 5769955..5771382(-) (sbcB) [Pseudomonas fluorescens strain KF1]
MTSIFWYDYETTGINPRSDRPLQVAGIRTDLDLNEVGAPVNLYCRPSDDILPHPAACAITGITPGILAQKGLAEADFMTR
VHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRTAYALRPEGITWPQQDGRVTLKLER
LTEANGIEHGQAHDALSDVRATIALARLVREKQPKLYDWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLDVDAETLRQRLYTRRDELAEGELPVPLKLLHINRCPVVAPLNVLRAQDRARLQLDMDA
YQARALRLTDAQEVWRDKLAAIYADEEFAPVTDPEQQLYDGFIGDRDRRLCEQVRAAEPAQLASQQWPFDDQRLPELLFR
YRARNFPDTLNSEEQQRWQFFCQQRLSDPQWGAPNTLEAFNQARQELAVSATPFQCQVLDQWQEFANALAARLKL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=437674 IM720_RS25970 WP_024077170.1 5769955..5771382(-) (sbcB) [Pseudomonas fluorescens strain KF1]
GTGACCTCCATTTTCTGGTACGACTATGAAACCACCGGCATCAACCCGCGCAGCGATCGCCCCCTTCAGGTAGCGGGTAT
CCGCACTGACCTCGACCTCAATGAGGTTGGCGCACCGGTCAACCTGTATTGCCGACCCAGTGACGATATCCTGCCTCACC
CGGCGGCCTGCGCCATTACCGGCATTACCCCGGGCATCCTGGCGCAAAAGGGCTTGGCCGAAGCCGACTTCATGACTCGG
GTGCATGCAGAACTGGCGGCTCCCGGCACCTGTGGCGCTGGTTACAACACCCTGCGCTTTGACGATGAGATGACGCGCTA
CAGCCTCTATCGCAACTTTTTCGACCCCTATGCGCGTGAATGGCAGGGCGGGAACAGTCGCTGGGATTTGATCGATGTGG
TGCGAACCGCCTATGCGCTGCGCCCGGAAGGGATCACCTGGCCCCAGCAGGATGGGCGTGTCACGCTCAAGCTTGAGCGT
TTGACCGAGGCCAATGGCATCGAGCATGGCCAGGCCCATGATGCCTTGTCCGATGTGCGCGCCACCATTGCCCTGGCCCG
GCTGGTGCGCGAGAAACAGCCCAAGTTGTACGACTGGCTGTTCCAGCTGCGCAGCAAGCAGCGGGTGATGGACCAGGTGC
GCCTGCTGCAACCGATGGTGCATATCTCCGGGCGTTTTTCTGCCGAACGCCATTATCTGGGGGTTGTATTGCCCCTGGCT
TGGCACCCGCGCAATCGCAATGCGCTGATCGTCTGCGACCTCGGGCTCGACCCGCAGGGCCTGTTGGACGTGGACGCCGA
GACCTTGCGCCAACGCCTCTATACTCGCCGTGATGAACTGGCCGAAGGCGAGTTGCCGGTGCCGCTCAAGTTGTTGCATA
TCAACCGCTGTCCAGTGGTCGCACCGTTGAACGTGCTGCGTGCCCAAGACCGTGCGCGGCTGCAATTGGATATGGACGCT
TATCAGGCGCGTGCGCTGCGGCTAACTGACGCACAGGAAGTTTGGCGCGACAAGTTGGCGGCGATTTACGCGGATGAAGA
GTTTGCACCGGTGACCGACCCGGAGCAGCAGCTCTACGATGGTTTTATCGGTGATCGTGATCGTCGTTTATGCGAGCAAG
TGCGAGCGGCAGAGCCTGCGCAATTAGCGAGCCAGCAGTGGCCATTTGATGATCAGCGTTTGCCGGAATTATTATTCCGC
TACCGAGCGCGTAACTTTCCTGACACCTTGAACAGTGAGGAGCAGCAACGCTGGCAATTCTTCTGTCAGCAACGTTTGAG
CGATCCACAATGGGGCGCCCCCAATACCCTGGAAGCATTTAATCAGGCGCGCCAGGAGTTGGCTGTTAGTGCTACGCCGT
TTCAATGCCAGGTGCTCGATCAATGGCAGGAGTTTGCCAATGCATTAGCGGCGCGCTTGAAGCTGTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(204-467)

Exonuclease (RNase_T)

(6-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

46.61

99.368

0.463